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I am having difficulty loading .RData files into ChAMP. I have read all the documentation and understand how to use champ.load to load in .idat files however I cannot figure out how to load in data from files other than .idat files. Any assistance you can provide would be greatly appreciated.
Hi there, thank you for your response. I suppose the issue is that it is not in the right format as when I load the RData file, the ChAMP commands will not work. I am sorry to ask such a basic question but I cannot seem to figure out what the right format is for the ChAMP functions from any of the package information, how can I ensure this data can be loaded into ChAMP appropriately? Thank you.