library(VariantAnnotation) download difficulties
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wrab425 • 0
@wrab425-8828
Last seen 6 months ago
United Kingdom

I have just downloaded the bioconductor packages using the bioclite R script and wanted to use the library Variant Annotation.

 

I typed library(VariantAnnotation)

and received the following error messages:

Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  there is no package called ‘RCurl’
Error: package or namespace load failed for ‘VariantAnnotation’

 

Please advise

variantannotation • 1.3k views
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@valerie-obenchain-4275
Last seen 2.7 years ago
United States

Did you try biocLite("RCurl")?

A system dependency for RCurl is libcurl, so you'll need to have that installed. If you get another error please show the error and output of sessionInfo().

Valerie

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