I ran these commands on RStudio:

> source("http://www.bioconductor.org/biocLite.R")
Bioconductor version 3.1 (BiocInstaller 1.18.4), ?biocLite for help
> library(AnnotationHub)
> ah <- AnnotationHub()
> hist <- display(ah)

and received:

Loading required package: shiny

Listening on http://127.0.0.1:3411
Error in loadNamespace(name) : there is no package called ‘rstudio’

After reading AnnotationHub has no (not all) data, I checked the same commands on terminal and they worked perfectly.

Any way to get them working on RStudio?

Thanks!

> sessionInfo()
R version 3.2.1 (2015-06-18)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: Fedora 21 (Twenty One)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8       
 [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] shiny_0.12.2         BiocInstaller_1.18.4 AnnotationHub_2.0.3

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.0                  IRanges_2.2.7                digest_0.6.8                
 [4] mime_0.4                     GenomeInfoDb_1.4.2           R6_2.1.1                    
 [7] xtable_1.7-4                 DBI_0.3.1                    stats4_3.2.1                
[10] magrittr_1.5                 RSQLite_1.0.0                httr_1.0.0                  
[13] stringi_0.5-5                curl_0.9.3                   S4Vectors_0.6.5             
[16] tools_3.2.1                  stringr_1.0.0                Biobase_2.28.0              
[19] httpuv_1.3.3                 parallel_3.2.1               BiocGenerics_0.14.0         
[22] AnnotationDbi_1.30.1         htmltools_0.2.6              interactiveDisplayBase_1.6.0
> traceback()
17: stop(e)
16: value[[3L]](cond)
15: tryCatchOne(expr, names, parentenv, handlers[[1L]])
14: tryCatchList(expr, classes, parentenv, handlers)
13: tryCatch(loadNamespace(name), error = function(e) stop(e))
12: getNamespace(ns)
11: asNamespace(ns)
10: getExportedValue(pkg, name)
9: rstudio::viewer
8: runApp(app, launch.browser = rstudio::viewer, ...)
7: .dataFrame3(df = object, ...)
6: display(object = df, summaryMessage = summaryMessage, serverOptions = serverOptions)
5: display(object = df, summaryMessage = summaryMessage, serverOptions = serverOptions)
4: .display(object)
3: .local(object, ...)
2: display(ah)
1: display(ah)

Any time you get an error that says (and I paraphrase):

Error <blahblahblahblah>: there is no package called '<whatevs>'

This is saying that you don't have the <whatevs> package, which also means that you need to install it before whatever you were trying to do will work. So install the rstudio package and it will work. Unless of course you need another dependency...