ignore.strand option in range() when using GRangesList

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d r ▴ 150

@d-r-5459

Last seen 6.9 years ago

Israel

Hello

I note that while the range() function for GRanges objects has an ignore.strand argument,

the equivalent function for GRangesList does not have this argument.

Is there a particular reason that this option was not included in the GRangesList function?

Also, what can I do if I do want to use this functionality (that is, get the range(s) for each element

in a GRangesList without regard to strand?

Thanks in advance

Dolev Rahat

granges • 1.2k views

ADD COMMENT • link 9.3 years ago d r ▴ 150

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Hi,

Val will add the ignore.strand argument today. Thanks Val!

In the mean time:

strand(grl) <- "*"
range(grl)

Cheers,

H.

ADD REPLY • link 9.3 years ago Hervé Pagès 16k

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Thanks. I really appreciate the effort!

ADD REPLY • link 9.3 years ago d r ▴ 150

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This has been added to GenomicRanges 1.21.25 in devel. Should be available via biocLite() tomorrow (Sept 12) by noon.

Valerie

ADD REPLY • link 9.3 years ago Valerie Obenchain ★ 6.8k

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