Hi,
I would like to know, how to change the column width of the HTML table in ReportingTools. I tried to use the hwriter function, but this results in a complete layout change of the table:
rpt.df <- rpt.df[sub,]
imagename.link <- paste0("./006_reports/barplots/", imagename[sub])
rpt.df$Image <- hwriteImage(imagename.link , link = imagename.link , table = FALSE, width=100, height=100)
sprotID <- gsub("^.*[[:space:]]", "\\1", rpt.df$sprot_Top_BLASTX_hit)
rpt.df$Link <- hwrite(as.character(sprotID), link = paste("http://www.uniprot.org/uniprot/", as.character(sprotID), sep = ''), table=FALSE)
rpt.df <- hwrite(rpt.df, br=TRUE, col.width=c(gene_ontology_blast='150px')) # this step should change the width of the column
htmlRep <- HTMLReport(shortName = "rnaseq_ntab",
title = "RNA-seq analysis of tobacco leaves and trichomes 09/2015-1",
reportDirectory = "./006_reports")
publish(rpt.df, htmlRep)
finish(htmlRep)
sessionInfo()
R version 3.2.0 (2015-04-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=de_DE.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=de_DE.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=de_DE.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] grid stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] hwriter_1.3.2 ReportingTools_2.8.0 knitr_1.11 cummeRbund_2.10.0 Gviz_1.12.1 rtracklayer_1.28.9 GenomicRanges_1.20.6
[8] GenomeInfoDb_1.4.2 IRanges_2.2.7 S4Vectors_0.6.5 fastcluster_1.1.16 reshape2_1.4.1 ggplot2_1.0.1 BiocGenerics_0.14.0
[15] RSQLite_1.0.0 DBI_0.3.1
loaded via a namespace (and not attached):
[1] Biobase_2.28.0 edgeR_3.10.2 splines_3.2.0 R.utils_2.1.0 Formula_1.2-1 latticeExtra_0.6-26
[7] RBGL_1.44.0 BSgenome_1.36.3 Rsamtools_1.20.4 Category_2.34.2 lattice_0.20-33 biovizBase_1.16.0
[13] limma_3.24.15 digest_0.6.8 RColorBrewer_1.1-2 XVector_0.8.0 colorspace_1.2-6 ggbio_1.16.1
[19] R.oo_1.19.0 Matrix_1.2-2 plyr_1.8.3 OrganismDbi_1.10.0 GSEABase_1.30.2 DESeq2_1.8.1
[25] XML_3.98-1.3 biomaRt_2.24.0 genefilter_1.50.0 zlibbioc_1.14.0 xtable_1.7-4 GO.db_3.1.2
[31] scales_0.3.0 BiocParallel_1.2.20 annotate_1.46.1 PFAM.db_3.1.2 GenomicFeatures_1.20.3 nnet_7.3-11
[37] proto_0.3-10 survival_2.38-3 magrittr_1.5 R.methodsS3_1.7.0 GGally_0.5.0 MASS_7.3-44
[43] RcppArmadillo_0.5.400.2.0 foreign_0.8-66 GOstats_2.34.0 graph_1.46.0 tools_3.2.0 matrixStats_0.14.2
[49] stringr_1.0.0 munsell_0.4.2 locfit_1.5-9.1 cluster_2.0.3 AnnotationDbi_1.30.1 lambda.r_1.1.7
[55] Biostrings_2.36.4 futile.logger_1.4.1 RCurl_1.95-4.7 dichromat_2.0-0 VariantAnnotation_1.14.13 AnnotationForge_1.10.1
[61] bitops_1.0-6 gtable_0.1.2 reshape_0.8.5 GenomicAlignments_1.4.1 gridExtra_2.0.0 Hmisc_3.16-0
[67] futile.options_1.0.0 stringi_0.5-5 Rcpp_0.12.0 geneplotter_1.46.0 rpart_4.1-10 acepack_1.3-3.3
