reading Agilent data files
1
0
Entering edit mode
@sean-davis-490
Last seen 3 months ago
United States
Have you looked at the limma function read.maimages? Sean ----- Original Message ----- From: "Olivier BUHARD" <obuhard@yahoo.fr> To: <bioconductor@stat.math.ethz.ch> Sent: Monday, December 27, 2004 5:39 AM Subject: [BioC] reading Agilent data files > Hi list, > > Could somebody tell me how (if it is possible) to read > the data brought with Agilent data files (from Feature > extraction software) about flags or other interesting > fields ? > I tried the read.Agilent() function from marray, but > it just seems to be able to load the intensity data > about fg and bg... wrong ? > > Thanks a lot > > BUHARD Olivier > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >
limma marray limma marray • 1.1k views
ADD COMMENT
0
Entering edit mode
@giovanni-coppola-893
Last seen 10.2 years ago
Hi Olivier, in LIMMA, you can use the information from the flag fields to weigh the features. A function to do this was posted by Joel Malard http://files.protsuggest.org/biocond/html/6897.html In addition, you may be interested in this post by Gordon Smyth http://files.protsuggest.org/biocond/html/6372.html Hope this helps Giovanni At 02:39 AM 12/27/2004, you wrote: >Hi list, > >Could somebody tell me how (if it is possible) to read >the data brought with Agilent data files (from Feature >extraction software) about flags or other interesting >fields ? >I tried the read.Agilent() function from marray, but >it just seems to be able to load the intensity data >about fg and bg... wrong ? > >Thanks a lot > >BUHARD Olivier > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor
ADD COMMENT

Login before adding your answer.

Traffic: 553 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6