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Hello everyone,
I am studying human methylome using illumina 450k beadchip. I am analyzing the data using minfi bioconductor package. My study includes 3 groups and I want to compare the methylation signatures among the three groups. I have followed the initial quality control and SWAN normalization steps and finally used dmpFinder().
Can anyone guide me in how to inerpret the result?
I want to find out loci that are hypo or hyper methylated in each pairwise group comparisons.
the header of the result is mentioned below:
cpgID | ,intercept | ,f | pval, | qval, | chr | pos, | strand, | Name,....... |