NMF Package error
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0
Entering edit mode
@deepak-tanwar-8113
Last seen 6 months ago
McGill University, Canada

I am getting following error while using plotting the calculated results from NMF package.

 

> dim(data)

# 12831 36


> res <- nmf(x = data, rank = 2)

> basismap(res)

# Error in match(x, table, nomatch = 0L) : node stack overflow




> sessionInfo()
                                                                                                                                                                         
R version 3.1.3 (2015-03-09)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
 [1] RColorBrewer_1.1-2  doParallel_1.0.8    iterators_1.0.7
 [4] foreach_1.4.2       NMF_0.20.6          synchronicity_1.1.4
 [7] bigmemory_4.4.6     BH_1.58.0-1         bigmemory.sri_0.1.3
[10] Biobase_2.26.0      BiocGenerics_0.12.1 cluster_2.0.2
[13] rngtools_1.2.4      pkgmaker_0.22       registry_0.3

loaded via a namespace (and not attached):
 [1] codetools_0.2-11 colorspace_1.2-6 compiler_3.1.3   digest_0.6.8
 [5] ggplot2_1.0.1    grid_3.1.3       gridBase_0.4-7   gtable_0.1.2
 [9] magrittr_1.5     MASS_7.3-42      munsell_0.4.2    plyr_1.8.3
[13] proto_0.3-10     Rcpp_0.11.6      reshape2_1.4.1   scales_0.2.5
[17] stringi_0.5-5    stringr_1.0.0    tools_3.1.3      xtable_1.7-4
NMF bioconductor R • 1.7k views
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Entering edit mode
@martin-morgan-1513
Last seen 5 months ago
United States

NMF is a CRAN package; see it's BugReports: field.

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