I am trying to run a Bioconductor package GOTHiC to detect significant interactions between distant loci.

The command is

paired = pairReads(fileName1, fileName2, sampleName="test",DUPLICATETHRESHOLD = 1, fileType="BAM")

I get the following error

Error in FUN(X[[i]], ...) : subscript out of bounds

When I do traceback, I get

5: lapply(X = X, FUN = FUN, ...)
4: sapply(strsplit(id1, "\\-"), "[[", 2)
3: sapply(strsplit(id1, "\\-"), "[[", 2)
2: .onlyPairing(fileName1, fileName2, sampleName, fileType)
1: pairReads(fileName1, fileName2, sampleName = "test", DUPLICATETHRESHOLD = 1,
       fileType = "BAM")

Any suggestions?

I'm having the same error, any solution?

Thanks!