Entering edit mode
Hi everyone!!
I´ve recently installed Bioconductor and run it this way:
source("http://bioconductor.org/biocLite.R")
biocLite()
biocLite("affydata")
library(affydata)
it was not for me, it was for a partner that wanted to show me something.
after this I tried to run my PCA scrip, using FactoMineR package, it return this:
> library (FactoMineR) Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called ‘pbkrtest’ Error: package or namespace load failed for ‘FactoMineR’
before installing bioconductor I used FactoMineR package, so the instalation of Bioconductor may be the cause.
Please Help!!!
Thanks!
It also happend with ggplot2,
> library(ggplot2)
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘Rcpp’
Error: package or namespace load failed for ‘ggplot2’
biocLite / BiocInstaller do not change the paths where R looks for installed packages, so the problem is elsewhere. Start R with the --vanilla flag (from the command line,
R --vanilla). Make sure you are looking in the right place for your packages via.libPaths(). Make suresessionInfo()returns the version of R you're expecting. Verify that ggplot2 is installed viainstalled.packages().