Diffbind.report error too many NAs
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mm2489 ▴ 20
@mm2489-7705
Last seen 7.4 years ago
United States

I'm getting the following error and I'm not sure why. Any help would be appreciated.

> my.DB2 = dba.report(mydata, bCounts=TRUE)

Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") :
  solving row 1: range cannot be determined from the supplied arguments (too many NAs)

 

I also got a warning message at the dna.analyze step:

> mydata = dba.analyze(mydata, method=DBA_ALL_METHODS)
....................
....................
converting counts to integer mode
gene-wise dispersion estimates
mean-dispersion relationship
final dispersion estimates
Warning message:
In pv.getPlotData(DBA, attributes = attributes, contrast = contrast,  :
  NAs introduced by coercion

 

diffbind • 1.2k views
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Entering edit mode
Rory Stark ★ 5.2k
@rory-stark-5741
Last seen 8 weeks ago
Cambridge, UK

First, what version of DiffBind are you using (from output of sessionInfo())? I fixed a bug in this area recently. Are you using the summits option in dba.count()?

If you could send me links to (or attach) the DBA objects before counting and after analysis, that would be most helpful.

Cheers-

Rory

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