Hello: I am wondering if GOLL2GO is not available anymore in the GO package. I just downloaded R 2.0.0 and installed Bioconductor. Although in the online description of GO the environment GOLL2GO is listed, I can not find it in my installed version. The output of GO() is Quality control information for GO Date built: Tue Sep 28 14:59:13 2004 Mappings found for non-probe based rda files: GOALLLOCUSID found 7514 GOBPANCESTOR found 8808 GOBPCHILDREN found 4244 GOBPOFFSPRING found 4244 GOBPPARENTS found 8808 GOCCANCESTOR found 1420 GOCCCHILDREN found 470 GOCCOFFSPRING found 470 GOCCPARENTS found 1420 GOLOCUSID2ALLGO found 37866 GOLOCUSID2GO found 37866 GOLOCUSID found 6246 GOMFANCESTOR found 7370 GOMFCHILDREN found 1337 GOMFOFFSPRING found 1337 GOMFPARENTS found 7370 GOTERM found 17601 I have several scripts that depend on GO and I wonder if I will have to rewrite them. Is LOCUSID same as LL (locus link) and why the change? Thanks, Ricardo. ~~~~~~~~~~~~~~~~~~~~~~ Ricardo A. Verdugo S., M.V. Juan Medrano Laboratory Animal Science Dept. UC Davis, CA 95616 ~~~~~~~~~~~~~~~~~~~~~~ [[alternative HTML version deleted]]

It is now GOLOCUSID2GO to make the naming the consistant throughout packages. We will update the information on the web. Thanks. >I am wondering if GOLL2GO is not available anymore in the GO package. > >I just downloaded R 2.0.0 and installed Bioconductor. > >Although in the online description of GO the environment GOLL2GO is listed, I can not find it in my installed version. > >The output of GO() is >Quality control information for GO >Date built: Tue Sep 28 14:59:13 2004 >Mappings found for non-probe based rda files: > GOALLLOCUSID found 7514 > GOBPANCESTOR found 8808 > GOBPCHILDREN found 4244 > GOBPOFFSPRING found 4244 > GOBPPARENTS found 8808 > GOCCANCESTOR found 1420 > GOCCCHILDREN found 470 > GOCCOFFSPRING found 470 > GOCCPARENTS found 1420 > GOLOCUSID2ALLGO found 37866 > GOLOCUSID2GO found 37866 > GOLOCUSID found 6246 > GOMFANCESTOR found 7370 > GOMFCHILDREN found 1337 > GOMFOFFSPRING found 1337 > GOMFPARENTS found 7370 > GOTERM found 17601 > >I have several scripts that depend on GO and I wonder if I will have to rewrite them. >Is LOCUSID same as LL (locus link) and why the change? > >Thanks, > >Ricardo. > >~~~~~~~~~~~~~~~~~~~~~~ > Ricardo A. Verdugo S., M.V. > Juan Medrano Laboratory > Animal Science Dept. > UC Davis, CA 95616 >~~~~~~~~~~~~~~~~~~~~~~ > [[alternative HTML version deleted]] > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084