riboSeqR: plotTranscript error
1
0
Entering edit mode
@antonvilas-7285
Last seen 9.1 years ago
Spain

Hi,

I've been trying to plot the alignment of ribosome profiling reads over an individual transcript sequence with the plotTranscript function. I have no RNA-seq data in this case.

 

> plotTranscript("ENST00000588673", coordinates = GRCh38_ffCs@CDS, riboDat = GRCh38_riboDat, length = 29, cap = 200)
Error in segments(as.vector(bp)[start(tw)] - 1, ymax * (1.015 + ((start(tw) -  :
  object 'segcols' not found

 

best,

Antón

riboSeqR • 1.1k views
ADD COMMENT
0
Entering edit mode
@thomas-j-hardcastle-3860
Last seen 7.1 years ago
United Kingdom

Patched in version 1.0.5; just uploaded to Bioconductor so should emerge in a day or two.

Thanks for the report.

Tom


-- 
Dr. Thomas J. Hardcastle

Senior Research Associate
Department of Plant Sciences
University of Cambridge
Downing Street
Cambridge, CB2 3EA
United Kingdom

ADD COMMENT

Login before adding your answer.

Traffic: 623 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6