Hello,
I have hundreds of tabular data stored as vdata objects in hdf4 files I would like to programmatically import into R. I researched and to my great surprise, could not find any libraries to import into R tabular vdata in hdf4... So I had the idea of converting the hdf4 file into hdf5 format using H4toh5 (http://www.hdfgroup.org/ftp/HDF5/tools/h4toh5/src/unpacked/doc/h4toh5lib_RM.html#Tools-h4toh5) and use rhdf5...
Source hdf4 file : http://arctus.serveftp.net/x.hdf
Created hdf5 file : http://arctus.serveftp.net/x.h5
library( rhdf5)
rhdf5::h5ls("x.h5")
*** caught segfault ***
address (nil), cause 'memory not mapped'
Traceback:
1: .Call("_h5ls", loc$H5Identifier@ID, depth, di, index_type, order, PACKAGE = "rhdf5")
2: rhdf5::h5ls("x.h5")
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Any ideas ?
thanks from advance
Servet
sessionInfo()
R version 3.1.2 (2014-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rhdf5_2.10.0
loaded via a namespace (and not attached):
[1] tools_3.1.2 zlibbioc_1.12.0
