Entering edit mode
Jeffrey Rasmussen
▴
100
@jeffrey-rasmussen-271
Last seen 10.2 years ago
Using GO 1.6.5 the following code produces a list of GO terms that are
annotated as being connected with a certain LL id, but have their
"Ontology" slot listed as "NA" (presumably because they are missing
from
GOTERM and the other GO* objects):
library(GO)
ll2go <- as.list.environment(GOLOCUSID2GO)
tmp <- lapply(ll2go, function (x) sapply(x, function(x)
ifis.na(x$Ontology)){ print(x$GOID) }))
Perhaps a more recent file was used to build GOLOCUSID2GO than was
used to
build the remaining GO annotations?
Jeff.
(Here's the list of missing terms)
GO:0001880
GO:0001881
GO:0001883
GO:0001886
GO:0030968
GO:0030970
GO:0030971
GO:0035199
GO:0035211
GO:0035214
GO:0035215
GO:0035224
GO:0035226
GO:0035227
GO:0035229
GO:0035232
GO:0035233
GO:0035234
GO:0043185
GO:0043190
GO:0043197
GO:0043198
GO:0048488
GO:0048489
GO:0051082
GO:0051087
GO:0051089
GO:0051092
GO:0051097
GO:0051101
GO:0051106
