Hi,

We are using Illumina's VeraCode technology with the GoldenGate assay to investigate 192 SNPs in a case-control study.

We are wondering if there is any software alternative to GenomeStudio to analyze the raw data. The beadarray package in Bioconductor seems like a possibility, but since Illumina's VeraCode and Illumina's BeadArray use somewhat different technologies, we are wondering if it is valid to use the package beadarray with VercaCode data.

In fact, we were unable to find examples of publications using VeraCode technology that did not use GenomeStudio for the data analysis. If you have any references, they will very welcome.

Thank you for your help!

Best wishes,

Laura