Hi All, I'm trying to install Rgraphviz and graphviz on my MAC with OSX 10.3.5 but I'm failing miserably so far: This is the error I get when installing graphviz (using ./configure and make from the terminal): gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../../../lefty -I/usr/local/include -I/usr/X11R6/include -g -O2 -fno-common -Wall -DNDEBUG -MT garray.lo -MD -MP -MF .deps/garray.Tpo -c garray.c -fno-common -DPIC -o .libs/garray.o In file included from /usr/include/sys/select.h:71, from ../../../lefty/common.h:66, from garray.c:3: /usr/include/sys/event.h:68: error: parse error before "u_short" /usr/include/sys/event.h:72: error: parse error before '}' token In file included from ../../../lefty/common.h:66, from garray.c:3: /usr/include/sys/select.h:88: error: parse error before "u_int" In file included from garray.c:3: ../../../lefty/common.h:132: error: conflicting types for `panic' /usr/include/mach/mach.h:79: error: previous declaration of `panic' make[5]: *** [garray.lo] Error 1 make[4]: *** [all-recursive] Error 1 make[3]: *** [all-recursive] Error 1 make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 Any tips or hints are welcome. This is graphviz version 1.16, the latest version AFAIK. thanks in advance, ingmar

On Tue, Oct 12, 2004 at 04:50:53PM +0200, Ingmar Visser wrote: > > Hi All, > I'm trying to install Rgraphviz and graphviz on my MAC with OSX 10.3.5 > but I'm failing miserably so far: > > This is the error I get when installing graphviz (using ./configure and make > from the terminal): > > > gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../../../lefty > -I/usr/local/include -I/usr/X11R6/include -g -O2 -fno-common -Wall -DNDEBUG > -MT garray.lo -MD -MP -MF .deps/garray.Tpo -c garray.c -fno-common -DPIC -o > .libs/garray.o > In file included from /usr/include/sys/select.h:71, > from ../../../lefty/common.h:66, > from garray.c:3: > /usr/include/sys/event.h:68: error: parse error before "u_short" > /usr/include/sys/event.h:72: error: parse error before '}' token > In file included from ../../../lefty/common.h:66, > from garray.c:3: > /usr/include/sys/select.h:88: error: parse error before "u_int" > In file included from garray.c:3: > ../../../lefty/common.h:132: error: conflicting types for `panic' > /usr/include/mach/mach.h:79: error: previous declaration of `panic' > make[5]: *** [garray.lo] Error 1 > make[4]: *** [all-recursive] Error 1 > make[3]: *** [all-recursive] Error 1 > make[2]: *** [all-recursive] Error 1 > make[1]: *** [all-recursive] Error 1 > make: *** [all] Error 2 > > Any tips or hints are welcome. > > This is graphviz version 1.16, the latest version AFAIK. And the documentation is pretty explicit that this is not supported (yet) AFAIK. And if you checked in the graphviz mailing lists you would see that 1.16 seems problematic against FreeBSD (and if you checked under the hood of 10.3.5 you would find a FreeBSD variant), so that might just explain most of it.... > > thanks in advance, ingmar > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------+