Entering edit mode
Auer Michael
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250
@auer-michael-953
Last seen 10.2 years ago
I would like to present the results of GOHyperG in the form of a table
with GO ID, Count, Pvalue and GOTERM. The problem lies within the
GOTERM
,because the output of the enviroment has changed!!!
I am calling GOHyperG with a series of LOCUS IDS, ids1
ids1MF<- GOHyperG(unique(unlist(ids1)),lib="hgu133a",what="MF")
Then I am building a matrix with the call. The matrix has the columns
GO
ID, Counts and pvalues. But I also want the GOTERM. The problem is
that
there is no function which reports the GOTERM by it self.
For example mget("GO:0016407",GOTERM))
$"GO:0016407"
GOID = GO:0016407
GO term = acetyltransferase activity
Definition for GO term = Catalysis of the transfer of an acetyl group
to
an acceptor molecule.
Ontology = MF
But I only want the GOTERM
ids1matrMF<-cbind(names(ids1MF$intCounts),
as.vector(ids1MF$intCounts),
as.vector(ids1MF$pvalues))
dimnames(ids1matrMF)[[2]]<-c(?GO ID?,?Counts?,?pvalues?)
How can I retrieve only the GOTERM?????
Thanx