Extracting information from .ab1 files
1
0
Entering edit mode
anuragm • 0
@anuragm-7148
Last seen 10.0 years ago
India

I wish to extract information from a .ab1 file. Specifically, the amplitude of primary and secondary base call peaks - P1AM.1 and P2AM.1

library(sangerseqR)
x=read.abif(file.choose())
x@data$P1AM.1

gives me output NULL. Any help regarding what I am doing wrong ?

 

ab1 sangerseqR • 1.7k views
ADD COMMENT
1
Entering edit mode
@aaronlstatham-6743
Last seen 9.8 years ago
Australia

Works for me - perhaps you have an odd ab1 file?

 

library(sangerseqR)

x=read.abif("1774_H05_LPR17621_IgE_PC_A11_015.ab1")

str(x@data$P1AM.1)

int [1:1059] 71 1271 235 1004 1118 469 1096 1082 484 824 ...

ADD COMMENT

Login before adding your answer.

Traffic: 969 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6