R-2.0 matchprobe install error
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@saurin-d-jani-944
Last seen 10.2 years ago
Hi, I am using R-2.0 and I am installing matchprobes , some how its giving me this error. How should I solve this? $ R CMD INSTALL -l /usr/local/lib/R/library matchprobes_1.0.8.tar.gz * Installing *source* package 'matchprobes' ... ** libs gcc -I/usr/local/lib/R/include -I/usr/local/include -D__NO_MATH_INLINES -mieee-fp -fPIC -g -O2 -c main.c -o main.o gcc -I/usr/local/lib/R/include -I/usr/local/include -D__NO_MATH_INLINES -mieee-fp -fPIC -g -O2 -c strutils.c -o strutils.o gcc -shared -L/usr/local/lib -o matchprobes.so main.o strutils.o ** R ** data ** inst ** save image Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, simply type: openVignette() For details on reading vignettes, see the openVignette help page. [1] TRUE Loading required package: hgu95av2cdf Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Loading required package: matchprobes Loading required package: hgu95av2probe Error: no dimnames attribute for array Execution halted /usr/local/lib/R/bin/INSTALL: line 1: 4314 Broken pipe cat "/usr/local/lib/R/library/matchprobes/R/matchprobes" ERROR: execution of package source for 'matchprobes' failed ** Removing '/usr/local/lib/R/library/matchprobes' ** Restoring previous '/usr/local/lib/R/library/matchprobes' thanks Saurin -- |------------------------------------------------ | Bioinformatician | | Department of Cell Biology and Anatomy | Medical University of South Carolina (MUSC) | 173 Ashley Ave | Charleston,SC - 29407 (US) | | Email: jani@musc.edu | Phone: (843)792-5483 |------------------------------------------------
matchprobes matchprobes • 1.1k views
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Jeff Gentry ★ 3.9k
@jeff-gentry-12
Last seen 10.2 years ago
> I am using R-2.0 and I am installing matchprobes , some how its giving me this > error. How should I solve this? > $ R CMD INSTALL -l /usr/local/lib/R/library matchprobes_1.0.8.tar.gz Why are you using the release 1.4 version of a package with R-2.0?
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Hi To reinforce Jeff's reply: please use the development version, 1.0.12. R-2.0.0 does not take cyclic package dependencies; previous versions of R didn't mind. Best wishes Wolfgang <quote who="Jeff Gentry"> >> I am using R-2.0 and I am installing matchprobes , some how its giving >> me this >> error. How should I solve this? >> $ R CMD INSTALL -l /usr/local/lib/R/library matchprobes_1.0.8.tar.gz > > Why are you using the release 1.4 version of a package with R-2.0? > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > ------------------------------------- Wolfgang Huber European Bioinformatics Institute European Molecular Biology Laboratory Cambridge CB10 1SD England Phone: +44 1223 494642 Http: www.dkfz.de/abt0840/whuber
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