Question

heatmap.2 like plot in ggplot

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Georg Otto ▴ 120

@georg-otto-6333

Last seen 6.0 years ago

United Kingdom

Dear all, I am wondering if anybody has implemented a heatmap.2 like functionality (from package gplots) in ggplots2?

Best wishes,

Georg

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ADD COMMENT • link updated 10.1 years ago by James W. MacDonald 67k • written 10.1 years ago by Georg Otto ▴ 120

score 0 · Answer 1 · 2014-10-29

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James W. MacDonald 67k

@james-w-macdonald-5106

Last seen 8 minutes ago

United States

Neither gplots nor ggplot2 are Bioconductor packages, so this isn't the place to ask this question. In addition, a simple google search of 'ggplot2 heatmap' brings up tons of hits, so I would refer you there.

ADD COMMENT • link 10.1 years ago James W. MacDonald 67k

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I take your point that gplots is not a bioconductor package. I am actually looking for something that extends the simple heatmap plot, but allows to include cluster trees, as heatmap.2 does, but in ggplot2.

ADD REPLY • link 10.1 years ago Georg Otto ▴ 120

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I take your point that gplots is not a bioconductor package. I am actually looking for something that extends the simple heatmap plot, but allows to include cluster trees, as heatmap.2 does, but in ggplot2.

ADD REPLY • link 10.1 years ago Georg Otto ▴ 120

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see http://www.bioconductor.org/packages/3.1/bioc/vignettes/ggtree/inst/doc/ggtree.html#visualize-tree-with-associated-matrix

ADD REPLY • link 9.3 years ago Guangchuang Yu ★ 1.2k