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Hi,
I receive an error in the code below when I want to create package from NCBI. I was recommended to post it here in another thread I have on seqanswers.com.
> makeOrgPackageFromNCBI(version = "0.1", author = "Some One <so@someplace.org>", + maintainer = "Some One <so@someplace.org>", outputDir = ".", + tax_id = "4896", genus = "Schizosaccharomyces", species = "pombe") Loading required package: GO.db Getting data for gene2pubmed.gz discarding data from other organisms Populating gene2pubmed table: table gene2pubmed filled Getting data for gene2accession.gz discarding data from other organisms Populating gene2accession table: table gene2accession filled Getting data for gene2refseq.gz discarding data from other organisms Populating gene2refseq table: table gene2refseq filled Getting data for gene2unigene discarding data from other organisms Populating gene2unigene table: table gene2unigene filled Getting data for gene_info.gz discarding data from other organisms Populating gene_info table: table gene_info filled Getting data for gene2go.gz discarding data from other organisms Populating gene2go table: Getting blast2GO data as a substitute for gene2go Error in sqliteExecStatement(con, statement, bind.data) : RS-DBI driver: (RS_SQLite_exec: could not execute: column name is not unique) In addition: Warning message: In file.remove(dbFileName) : cannot remove file 'org.Spombe.eg.sqlite', reason 'Permission denied'
Thanks in advance!