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drnknmstrr
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@drnknmstrr-6906
Last seen 10.1 years ago
Hi,
I am confused by this sentence in the vignette for RNASeqPower:
"The depth of sequencing and consequent expected count µ for a given transcript, argument
depth."
I don't understand how Mu and depth can be used interchangeably. Should this just be the number of reads mapping to a transcript or does this value need to be normalized by transcript length and read length?
cheers,
Ruben
From looking at the code, I believe depth = mu = number of reads.
https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/RNASeqPower/R/rnapower.R