I am currently using R v3.1.1. I want to install "wateRmelon" R package but it is not available for R version 3.1.1. -- output of sessionInfo(): Installing package into ???/usr/local/lib/R/site-library??? (as ???lib??? is unspecified) Warning message: package ???wateRmelon??? is not available (for R version 3.1.1) -- Sent via the guest posting facility at bioconductor.org.

Did you install using: source("http://bioconductor.org/biocLite.R") biocLite("wateRmelon") If so and you still get an error, be sure to include the output of sessionInfo(). Sean On Sun, Aug 17, 2014 at 9:10 PM, CSI [guest] <guest at="" bioconductor.org=""> wrote: > I am currently using R v3.1.1. I want to install "wateRmelon" R package > but it is not available for R version 3.1.1. > > -- output of sessionInfo(): > > Installing package into ???/usr/local/lib/R/site-library??? > (as ???lib??? is unspecified) > Warning message: > package ???wateRmelon??? is not available (for R version 3.1.1) > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]

Hi, JingXian. On Sun, Aug 17, 2014 at 9:49 PM, JingXian Teo <jing_xian90 at="" hotmail.com=""> wrote: > Hi, > > Thank you for your reply. > > I get warning messages when installing wateRmelon package. > > Error: > > Warning messages: > 1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : > installation of package ?IlluminaHumanMethylation450k.db? had non- zero > exit status > 2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : > installation of package ?wateRmelon? had non-zero exit status > Hi, JingXian. Paste into the email the entire output of the installation process (the actual error message is there) and the output of sessionInfo(). Sean > > regards, > JingXian > > > > ------------------------------ > Date: Sun, 17 Aug 2014 21:26:02 -0400 > Subject: Re: [BioC] R package not available for R v3.1.1 > From: sdavis2 at mail.nih.gov > To: guest at bioconductor.org > CC: bioconductor at r-project.org; jing_xian90 at hotmail.com; > Leonard.Schalkwyk at kcl.ac.uk > > Did you install using: > > source("http://bioconductor.org/biocLite.R") > biocLite("wateRmelon") > > > If so and you still get an error, be sure to include the output of > sessionInfo(). > > Sean > > > On Sun, Aug 17, 2014 at 9:10 PM, CSI [guest] <guest at="" bioconductor.org=""> > wrote: > > I am currently using R v3.1.1. I want to install "wateRmelon" R package > but it is not available for R version 3.1.1. > > -- output of sessionInfo(): > > Installing package into ???/usr/local/lib/R/site-library??? > (as ???lib??? is unspecified) > Warning message: > package ???wateRmelon??? is not available (for R version 3.1.1) > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > [[alternative HTML version deleted]]

Please install packages using biocLite as I suggested below and as instructed on the Bioconductor website. Sean On Aug 20, 2014 9:16 PM, "JingXian Teo" <jing_xian90 at="" hotmail.com=""> wrote: > Hi Sir, > > Sorry for the late reply. This is the installation process for wateRmelon > and also IlluminaHuman Methylation450k. > > > install.packages("wateRmelon") > Installing package into ?/usr/local/lib/R/site-library? > (as ?lib? is unspecified) > --- Please select a CRAN mirror for use in this session --- > Warning message: > package ?wateRmelon? is not available (for R version 3.1.1) > > > >install.packages("IlluminaHumanMethylation450k") > Installing package into ?/usr/local/lib/R/site-library? > (as ?lib? is unspecified) > Warning message: > package ?IlluminaHumanMethylation450k? is not available (for R version > 3.1.1) > > This is the sessionInfo(): > > > sessionInfo() > R version 3.1.1 (2014-07-10) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=en_SG.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_SG.UTF-8 LC_COLLATE=en_SG.UTF-8 > [5] LC_MONETARY=en_SG.UTF-8 LC_MESSAGES=en_SG.UTF-8 > [7] LC_PAPER=en_SG.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_SG.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > loaded via a namespace (and not attached): > [1] tcltk_3.1.1 tools_3.1.1 > > Thank you for your help. > > Best regards, > JingXian > > > > > ------------------------------ > Date: Mon, 18 Aug 2014 06:16:28 -0400 > Subject: Re: [BioC] R package not available for R v3.1.1 > From: sdavis2 at mail.nih.gov > To: jing_xian90 at hotmail.com; bioconductor at r-project.org > > Hi, JingXian. > > > > > On Sun, Aug 17, 2014 at 9:49 PM, JingXian Teo <jing_xian90 at="" hotmail.com=""> > wrote: > > Hi, > > Thank you for your reply. > > I get warning messages when installing wateRmelon package. > > Error: > > Warning messages: > 1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : > installation of package ?IlluminaHumanMethylation450k.db? had non- zero > exit status > 2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : > installation of package ?wateRmelon? had non-zero exit status > > > Hi, JingXian. > > Paste into the email the entire output of the installation process (the > actual error message is there) and the output of sessionInfo(). > > Sean > > > > > regards, > JingXian > > > > ------------------------------ > Date: Sun, 17 Aug 2014 21:26:02 -0400 > Subject: Re: [BioC] R package not available for R v3.1.1 > From: sdavis2 at mail.nih.gov > To: guest at bioconductor.org > CC: bioconductor at r-project.org; jing_xian90 at hotmail.com; > Leonard.Schalkwyk at kcl.ac.uk > > Did you install using: > > source("http://bioconductor.org/biocLite.R") > biocLite("wateRmelon") > > > If so and you still get an error, be sure to include the output of > sessionInfo(). > > Sean > > > On Sun, Aug 17, 2014 at 9:10 PM, CSI [guest] <guest at="" bioconductor.org=""> > wrote: > > I am currently using R v3.1.1. I want to install "wateRmelon" R package > but it is not available for R version 3.1.1. > > -- output of sessionInfo(): > > Installing package into ???/usr/local/lib/R/site-library??? > (as ???lib??? is unspecified) > Warning message: > package ???wateRmelon??? is not available (for R version 3.1.1) > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > [[alternative HTML version deleted]]