Entering edit mode
Dear all,
We are pleased to announce that the new Ensembl marts for release 76
are now live on www.ensembl.org.
You can change your host to access our most recent data:
mart <- useMart(biomart="ENSEMBL_MART_ENSEMBL",
host="www.ensembl.org", path="/biomart/martservice")
If you are not able to move to the new human assembly GRCh38, our new
archive website provide access to the previous annotations:
mart <- useMart(biomart="ENSEMBL_MART_ENSEMBL",
host="grch37.ensembl.org", path="/biomart/martservice")
Ensembl Genes 76
Updated human assembly to GRCh38
Retirement of the human expression data (eGenetics/SANBI EST
and GNF/Atlas) and the zebrafish expression data (ZFIN). This will
result in the removal of the "EXPRESSION" filter and attribute
sections.
Retirement of the transcript splicing events data computed by
the pipeline developed as part of the ASTD project. These data will be
retired for human (Homo sapiens), mouse (Mus musculus), rat (Rattus
norvegicus), zebrafish (Danio rerio), c.elegans (Caenorhabitis
elegans) and fruitfly (Drosophila melanogaster). This will result in
the removal of the "Transcript event" filter and attribute sections.
Added new species Amazon molly (Poecilia formosa) and Olive
baboon (Papio anubis)
Added new Gene and Transcript version attributes for all the
species
Added new Transcription Start Site (TSS) attribute in the
structure and sequence sections for all the species.
Added "QTL chromosome name" and "QTL region" filters for sheep
and chicken
Added marker start and end filters for sheep
Ensembl Variation 76
Updated human assembly to GRCh38
Added "QTL chromosome name" and "QTL region" filters for sheep
and chicken
A complete list of the changes in release 76 can be found at
http://www.ensembl.org/info/website/news.html
Best Regards,
Thomas
--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
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