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Nikolas Balanis
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@nikolas-balanis-6680
Last seen 10.2 years ago
This is somewhat related to this question, I just want some more
clarification on using the CNA function. This is probably very
elementary,
I apologize in advance
https://stat.ethz.ch/pipermail/bioconductor/2007-September/019138.html
>From an agilent data set the SystematicName column is composed of
elements
of the form chr3:175483690-175485000. So for example for this element
the
chromosome # is 3, so the vector of these #s for all elements is
passed as
chrom in the CNA function. But what is the position numeric passed to
maploc in the CNA function? From the documentation the maploc argument
is
"the locations of marker on the genome. Vector of length same as the
number
of rows of genomdat. This has to be numeric." So it has to be numeric
from
the DNAcopy documentation. Is it the first value 175483690, the second
value 175485000 , or the average of the two 175484345, or something
else
that I am missing completely? I cant seem to find any clarification on
this
anywhere.
Nikolas Balanis
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