Hi, I have a set of normalized data from tcga. I would like to find out the co-expressed genes, with the set of genes of my interest. Can any one suggest a better way to find it. with regards, S.Deepak -- output of sessionInfo(): genefilter() -- Sent via the guest posting facility at bioconductor.org.

Dear S.Deepak, Have you tried geneRecommender? Another approach is identify modules using WGCNA, and look for enrichment of your query gene set in the modules. Best regards, Anthony -----Original Message----- From: bioconductor-bounces@r-project.org on behalf of deepak [guest] Sent: Tue 7/15/2014 7:03 PM To: bioconductor@r-project.org; deepakkarthik02@gmail.com Cc: genefilter Maintainer Subject: [BioC] co-expressed genes Hi, I have a set of normalized data from tcga. I would like to find out the co-expressed genes, with the set of genes of my interest. Can any one suggest a better way to find it. with regards, S.Deepak -- output of sessionInfo(): genefilter() -- Sent via the guest posting facility at bioconductor.org. _______________________________________________ Bioconductor mailing list Bioconductor@r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]