r devel ????
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@alberto-goldoni-711
Last seen 10.2 years ago
> getBioC(develOK=TRUE) Running getBioC version 1.2.64.... If you encounter problems, first make sure that you are running the latest version of getBioC() which can be found at: www.bioconductor.org/getBioC.R Please direct any concerns or questions to bioconductor@stat.math.ethz.ch. Please select an installation directory: 1:/usr/local/lib/R/site-library 2:/usr/lib/R/site-library 3:/usr/lib/R/library Selection: 2 Loading required package: reposTools Error in grep("[[:alpha:]]", vers) : couldn't find function "getRversion" WHY????????? HOW CAN I INSTALL DEVEL PACKAGE???? -- Dott. Goldoni Alberto
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@james-w-macdonald-5106
Last seen 2 days ago
United States
Alberto Goldoni wrote: >>getBioC(develOK=TRUE) > > Running getBioC version 1.2.64.... > If you encounter problems, first make sure that > you are running the latest version of getBioC() > which can be found at: www.bioconductor.org/getBioC.R > > Please direct any concerns or questions to bioconductor@stat.math.ethz.ch. > > Please select an installation directory: > 1:/usr/local/lib/R/site-library > 2:/usr/lib/R/site-library > 3:/usr/lib/R/library > Selection: 2 > Loading required package: reposTools > Error in grep("[[:alpha:]]", vers) : couldn't find function "getRversion" > > > > WHY????????? > HOW CAN I INSTALL DEVEL PACKAGE???? As has been noted several times in the past few days, you need to have the devel version of R installed in order to install the devel version of BioC. -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109
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On Tue, Sep 14, 2004 at 11:39:42AM -0400, James W. MacDonald wrote: > Alberto Goldoni wrote: > >>getBioC(develOK=TRUE) <snip> > >WHY????????? > >HOW CAN I INSTALL DEVEL PACKAGE???? > > As has been noted several times in the past few days, you need to have > the devel version of R installed in order to install the devel version > of BioC. Based on this, what about a line in getBioC, like if(develOK) cat("You have chosen the devel version of Bioconductor. Please note that this requires the devel version of R.\n") Hmm come to think of it, I guess this might be checked automatically in the next version, since it seems that R 2.0 will have a function echoing the version. -- Kasper Daniel Hansen, Research Assistant Department of Biostatistics, University of Copenhagen
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> Hmm come to think of it, I guess this might be checked automatically in > the next version, since it seems that R 2.0 will have a function echoing > the version. I actually just updated the check in getBioC for minimum versions such that devel requires >= 2.0 (and release 1.4 requires >= 1.9).
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