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Ryan C. Thompson
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7.9k
@ryan-c-thompson-5618
Last seen 6 weeks ago
Icahn School of Medicine at Mount Sinaiā¦
Hello,
I am a happy user of the graphite package, but I would like to have
the
capability to use additional pathways not provided in the graphite
package. I have these pathways in BioPAX format (downloaded from
WikiPathways). I notice that the graphite paper talks about conversion
BioPAX to SIF, but the package does not seem to provide a method to do
the conversion, but rather simply provides the results of that
conversion on several common sources of pathway data. Would it also be
possible to include the conversion code, so that I could use any
BioPAX
pathway data that I choose with graphite?
Thanks,
-Ryan Thompson