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Last seen 10.3 years ago
I'm using edgeR for analysis of may data and I'm not sure what total
count filter value cutoff value I should use, My reads are paired 50bP
reads and total reads per sample is about 80,000,000. I tried cutoff
values of 5,10,15,30,50 and 100 and I only saw differences between 50
and 100 but still looking for logical reason to chose the cutoff
value.
Appreciate your help,
Mahnaz
-- output of sessionInfo():
R 3.0.2
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