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SPRINT
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@sprint-5767
Last seen 10.2 years ago
Dear List Members
Registration is now open for the above course, this is free to all and
part-funded by PRACE (and run in conjunction with ARCHER and HPC
Wales). After recent upgrades to SPRINT (now also running on Mac
multi-cores and compatible with MPI3) we have put this course together
to provide guidance for our package and its parallelised R and
Bioconductor packages.
Registration and information available here:
http://www.archer.ac.uk/training/
Who may benefit:
Anyone dealing with large data sets (next gen sequencing or microarray
data) in R, where computation times or memory issues arise when using
machine learning (clustering, classification) or other approaches
(bootstrapping, measuring distances between sequences, applying
functions for large matrices, other statistics).
We will outline some HPC basics and how to access HPC resources, but
this course is not intended to introduce or develop parallel
programming skills. However, you're more than welcome to join in
and/or seek us out for discussion of "Big Data" in R.
Pre-requisites:
Basic familiarity with using R. Basic familiarity with large
biological data sets (not a hard requirement, but our use cases will
focus on these types of data).
Visit www.r-sprint.org to get an overview of the parallelised
functionality SPRINT currently provides.
SPRINT Project
sprint at ed.ac.uk
www.r-sprint.org
The University of Edinburgh
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
Dr. Thorsten Forster
Division of Pathway Medicine (DPM)
University of Edinburgh Medical School
Chancellor's Building
49 Little France Crescent
Edinburgh
Scotland, UK
EH16 4SB
0131 242 6287
www.pathwaymedicine.ed.ac.uk
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.