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Ryan C. Thompson
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7.9k
@ryan-c-thompson-5618
Last seen 6 months ago
Icahn School of Medicine at Mount Sinaiā¦
Hello,
I am trying to understand the methods used in DEXSeq, and I was hoping
you could clear up some of the details of the dispersion trend
squeezing
strategy. In particular, when fitting the dispersion-mean trend, what
is
used as the mean for a given exon? Is this computed only based on the
exon's own counts, or is it the mean of all the counts for that exon,
including the sum of counts in other exons? If it is the latter,
wouldn't the mean be identical for every exon in the same gene, since
the total counts for that gene are constant, and if so, is this the
intended effect?
Thanks,
-Ryan Thompson