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Last seen 10.2 years ago
I posted this same quandary on Biostars and stack overflow.
I am attempting to import a fasta file of sequences into R using
Bioconductor's 'Biostrings' package and the 'DNAStringSet' function
but I keep getting the same error:
Error in .Call2("new_XString_from_CHARACTER", classname, x,
start(solved_SEW), :
key 112 (char 'p') not in lookup table
My fasta file ("FileName.fa") is comprised of various length
sequences, in the following format:
>GeneNameOne
CAGACACCCATAGATACAGATAGACAGATAGAGAAGACACCACCACACAATGA
>GeneNameTwo
CGCGACATGAACCCATGATAGACGATGAGACCCCACACACACC
...etc
I performed 'grep p FileName.fa' in the Unix terminal, but I received
no output.
Does anyone have an idea on what is going on?
Thanks in advance.
-- output of sessionInfo():
Error in .Call2("new_XString_from_CHARACTER", classname, x,
start(solved_SEW), :
key 112 (char 'p') not in lookup table
--
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