Hello, I'm running R 1.9.1 on Windows 2000 and tried to test some of the code in the AnnBuilder (1.4.2) package from the vignette. I'm encountering an error, which I'm not clear on how to fix. Code and error are copied below. Note that I've tried to run the same code on Linux (R version 1.9.0) and got the same error. Any advice on this? Thanks, Elisabetta --- > myBase<-file.path(.path.package("AnnBuilder"), "data", "thgu95a") > myBaseType<-"gb" > mySrcUrls<-c(LL="http://www.bioconductor.org/datafiles/wwwsources/Tl l_tmpl.gz", UG="http://www.bioconductor.org/datafiles/wwwsources/Ths.data.gz", GO="http://www.bioconductor.org/datafiles/wwwsources/Tgo.xml") > ABPkgBuilder(baseName=myBase, srcUrls=mySrcUrls, baseMapType=myBaseType, pkgName="myPkg", pkgPath="C:\tmp", organism="human", makeXML=F) [1] "It may take me a while to process the data. Be patient!" Error in url(sourceURLs[["GO"]], open = "r") : Object "sourceURLs" not found ---

>I'm running R 1.9.1 on Windows 2000 and tried to test some of the code in >the AnnBuilder (1.4.2) package from the vignette. >I'm encountering an error, which I'm not clear on how to fix. Code and >error are copied below. Note that I've tried to run the same code on Linux >(R version 1.9.0) and got the same error. >Any advice on this? I just noticed this bug and will have it fixed today. Thanks. >Thanks, >Elisabetta > >--- >> myBase<-file.path(.path.package("AnnBuilder"), "data", "thgu95a") >> myBaseType<-"gb" >> mySrcUrls<-c(LL="http://www.bioconductor.org/datafiles/wwwsources/Tll_ tmpl.gz", >UG="http://www.bioconductor.org/datafiles/wwwsources/Ths.data.gz", >GO="http://www.bioconductor.org/datafiles/wwwsources/Tgo.xml") >> ABPkgBuilder(baseName=myBase, srcUrls=mySrcUrls, baseMapType=myBaseType, >pkgName="myPkg", pkgPath="C:\tmp", organism="human", makeXML=F) >[1] "It may take me a while to process the data. Be patient!" >Error in url(sourceURLs[["GO"]], open = "r") : > Object "sourceURLs" not found >--- > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084