Entering edit mode
Elisabetta Manduchi
▴
160
@elisabetta-manduchi-575
Last seen 10.3 years ago
Hello,
I'm running R 1.9.1 on Windows 2000 and tried to test some of the code
in
the AnnBuilder (1.4.2) package from the vignette.
I'm encountering an error, which I'm not clear on how to fix. Code and
error are copied below. Note that I've tried to run the same code on
Linux
(R version 1.9.0) and got the same error.
Any advice on this?
Thanks,
Elisabetta
---
> myBase<-file.path(.path.package("AnnBuilder"), "data", "thgu95a")
> myBaseType<-"gb"
> mySrcUrls<-c(LL="http://www.bioconductor.org/datafiles/wwwsources/Tl
l_tmpl.gz",
UG="http://www.bioconductor.org/datafiles/wwwsources/Ths.data.gz",
GO="http://www.bioconductor.org/datafiles/wwwsources/Tgo.xml")
> ABPkgBuilder(baseName=myBase, srcUrls=mySrcUrls,
baseMapType=myBaseType,
pkgName="myPkg", pkgPath="C:\tmp", organism="human", makeXML=F)
[1] "It may take me a while to process the data. Be patient!"
Error in url(sourceURLs[["GO"]], open = "r") :
Object "sourceURLs" not found
---