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Last seen 10.2 years ago
Hi all,
I am currently trying to install an organism package built using the
makeOrgPackageFromNCBI() function from the AnnotationForge Package.
Unfortunately, when I attempt to install the package, I get an error
informing me that, whilst AnnotationDbi 1.24.0 was found, the organism
package requires >= AnnotationDbi 1.25.2.
> install.packages("*organism_package_name*", repos = NULL, type =
"source")
* installing *source* package ???*organism_package_name*??? ...
** R
** inst
** preparing package for lazy loading
Error : package ???AnnotationDbi??? 1.24.0 was found, but >= 1.25.2 is
required by ???*organism_package_name*???
ERROR: lazy loading failed for package ???*organism_package_name*???
* removing ???/
Warning message:
In install.packages("*organism_package_name*", repos = NULL, :
installation of package ???*organism_package_name*??? had non-zero
exit status
According to the AnnotationDbi page on Bioconductor, 1.24.0 is the
current release version. I have tried to reinstall the AnnotationDbi
package, but I get the same error.
How can I update to the required AnnotationDbi version?
Joseph
-- output of sessionInfo():
> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_IE.UTF-8/en_IE.UTF-8/en_IE.UTF-8/C/en_IE.UTF-8/en_IE.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.12.0
loaded via a namespace (and not attached):
[1] tools_3.0.2
>
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