yes. Also below is a thread of recent responses from Dan and Steve ​regarding solutions to using release and devel version of R. Caveat: this can potentially take a significant amount of time to get it right if you want to run both release and devel versions of R, depending on the particulars of your current setup. https://stat.ethz.ch/pipermail/bioconductor/2014-January/057154.html On Mon, Feb 3, 2014 at 8:14 AM, Julian Gehring <julian.gehring@embl.de>wrote: > Hi Kyle, > > DESeq2 1.3.35 is part of the current developer branch of bioc (2.14) [ > http://bioconductor.org/packages/devel/bioc/html/DESeq2.html], while the > DESeq2 1.2.9 is part of the stable release (bioc 2.13). If you want to use > DESeq2 1.3.35, you should consider upgrading your bioc installation to the > developer branch: http://www.bioconductor.org/developers/how- to/useDevel/ > > Best wishes > Julian > > > > On 02/03/2014 07:59 AM, Kyle Lambert [guest] wrote: > >> >> I have been investigating how to update DESeq2 to version 1.3.35. When I >> entered: >> >>> source("http://bioconductor.org/biocLite.R") >>> biocLite("DESeq2") >>> >> My DESeq2 updated to 1.2.9. >> I read that in order to get 1.3.35 bioconductor has to be updated from >> 2.13 to 2.14. However, it seems the current release of bioconductor is >> 2.13, and 2.14 is still being developed. Is Bioconductor version 2.14 >> unavailable for use right now? And is my information correct or is there a >> way to update DESeq2 to version 1.3.35? >> >> -- output of sessionInfo(): >> >> sessionInfo() >>> >> R version 3.0.2 (2013-09-25) >> Platform: x86_64-w64-mingw32/x64 (64-bit) >> >> locale: >> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United >> States.1252 >> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C >> [5] LC_TIME=English_United States.1252 >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> loaded via a namespace (and not attached): >> [1] tools_3.0.2 >> >> -- >> Sent via the guest posting facility at bioconductor.org. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane. >> science.biology.informatics.conductor >> >> > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane. > science.biology.informatics.conductor > [[alternative HTML version deleted]]