All, I am building a data package from locuslink Ids (about 27000 of them). I get the following warning message followed by MANY warnings about NAs introduced by coercion. I then get an error message: ABPkgBuilder(baseName="probe2ll.human.txt",srcUrls= getSrcUrl("all","human"),baseMapType="ll",pkgName="qhPkg",pkgPath="/ Users/sdavis/Work/DataPackages/qiagen") Warning: data length [412710] is not a sub-multiple or multiple of the number of rows [29480] in matrix .... Warning: NAs introduced by coercion Error in assign(x[i], value[[i2]], envir = envir, inherits = inherits) : symbol print-name too long Any ideas? Here is an excerpt of my base file: > read.table("probe2ll.human.txt") V1 V2 1 H200000001 10 2 H200000002 125 3 H200000005 7051 4 H200000006 2235 5 H200000007 2731 6 H200000008 2206 7 H200000010 4049 8 H200000011 38 9 H200000012 1088 10 H200000014 5724 11 H200000016 5277 Thanks, Sean

Could you also tell me which version of AnnBuilder (release or devel) you have? Jianhua >Mime-Version: 1.0 (Apple Message framework v619) >Content-Transfer-Encoding: 7bit >To: Bioconductor <bioconductor@stat.math.ethz.ch> >From: Sean Davis <sdavis2@mail.nih.gov> >Date: Wed, 18 Aug 2004 09:04:49 -0400 >Received-SPF: none (hypatia: domain of bioconductor- bounces@stat.math.ethz.ch does not designate permitted sender hosts) >Received-SPF: none (hypatia: domain of sdavis2@mail.nih.gov does not designate permitted sender hosts) >X-Virus-Scanned: by amavisd-new at stat.math.ethz.ch >X-Spam-Checker-Version: SpamAssassin 2.63 (2004-01-11) on hypatia.math.ethz.ch >X-Spam-Level: >X-Spam-Status: No, hits=-0.8 required=5.0 tests=AWL autolearn=no version=2.63 >Subject: [BioC] ABPkgBuilder question >X-BeenThere: bioconductor@stat.math.ethz.ch >X-Mailman-Version: 2.1.5 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Unsubscribe: <https: stat.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=unsubscribe> >List-Archive: <https: stat.ethz.ch="" pipermail="" bioconductor=""> >List-Post: <mailto:bioconductor@stat.math.ethz.ch> >List-Help: <mailto:bioconductor- request@stat.math.ethz.ch?subject="help"> >List-Subscribe: <https: stat.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=subscribe> > >All, > >I am building a data package from locuslink Ids (about 27000 of them). >I get the following warning message followed by MANY warnings about NAs >introduced by coercion. I then get an error message: > >ABPkgBuilder(baseName="probe2ll.human.txt",srcUrls= >getSrcUrl("all","human"),baseMapType="ll",pkgName="qhPkg",pkgPath="/ >Users/sdavis/Work/DataPackages/qiagen") >Warning: data length [412710] is not a sub-multiple or multiple of the >number of rows [29480] in matrix >.... >Warning: NAs introduced by coercion >Error in assign(x[i], value[[i2]], envir = envir, inherits = inherits) : > symbol print-name too long > >Any ideas? > >Here is an excerpt of my base file: > > > read.table("probe2ll.human.txt") > V1 V2 >1 H200000001 10 >2 H200000002 125 >3 H200000005 7051 >4 H200000006 2235 >5 H200000007 2731 >6 H200000008 2206 >7 H200000010 4049 >8 H200000011 38 >9 H200000012 1088 >10 H200000014 5724 >11 H200000016 5277 > >Thanks, >Sean > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084