Entering edit mode
Andreas Leha
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30
@andreas-leha-6343
Last seen 6.8 years ago
Hi all,
I have troubles installing (better: loading) BiocGenerics. See below
[fn:1].
What am I to do here?
Regards,
Andreas
[fn:1]
sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=de_DE.UTF-8 LC_NUMERIC=C
[3] LC_TIME=de_DE.UTF-8 LC_COLLATE=de_DE.UTF-8
[5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=C
[7] LC_PAPER=de_DE.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
Footnotes:
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] andRstuff_1.0 devtools_1.3 tikzDevice_0.7.0 filehash_2.2-1
loaded via a namespace (and not attached):
[1] digest_0.6.3 evaluate_0.4.7 grid_3.0.2 httr_0.2
memoise_0.1
[6] parallel_3.0.2 plyr_1.8 RCurl_1.95-4.1 stringr_0.6.2
tools_3.0.2
[11] whisker_0.3-2
> source("http://bioconductor.org/biocLite.R")
Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help
> biocLite("BiocGenerics")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version
3.0.2.
Installing package(s) 'BiocGenerics'
trying URL 'http://bioconductor.org/packages/2.13/bioc/src/contrib/Bio
cGenerics_0.8.0.tar.gz'
Content type 'application/x-gzip' length 30969 bytes (30 Kb)
opened URL
==================================================
downloaded 30 Kb
* installing *source* package ?BiocGenerics? ...
** R
** inst
** preparing package for lazy loading
Warning: class "connection" is defined (with package slot ?filehash?)
but no metadata object found to revise subclass information---not
exported? Making a copy in package ?BiocGenerics?
Warning: subclass "file" of class "connection" is not local and cannot
be updated for new inheritance information; consider setClassUnion()
Creating a new generic function for ?append? in package ?BiocGenerics?
Creating a new generic function for ?as.data.frame? in package
?BiocGenerics?
Creating a new generic function for ?as.vector? in package
?BiocGenerics?
Creating a new generic function for ?cbind? in package ?BiocGenerics?
Creating a new generic function for ?rbind? in package ?BiocGenerics?
Creating a new generic function for ?duplicated? in package
?BiocGenerics?
Creating a new generic function for ?anyDuplicated? in package
?BiocGenerics?
Creating a new generic function for ?eval? in package ?BiocGenerics?
Creating a new generic function for ?pmax? in package ?BiocGenerics?
Creating a new generic function for ?pmin? in package ?BiocGenerics?
Creating a new generic function for ?pmax.int? in package
?BiocGenerics?
Creating a new generic function for ?pmin.int? in package
?BiocGenerics?
Creating a new generic function for ?Reduce? in package ?BiocGenerics?
Creating a new generic function for ?Filter? in package ?BiocGenerics?
Creating a new generic function for ?Find? in package ?BiocGenerics?
Creating a new generic function for ?Map? in package ?BiocGenerics?
Creating a new generic function for ?Position? in package
?BiocGenerics?
Creating a new generic function for ?get? in package ?BiocGenerics?
Creating a new generic function for ?mget? in package ?BiocGenerics?
Creating a new generic function for ?is.unsorted? in package
?BiocGenerics?
Creating a new generic function for ?lapply? in package ?BiocGenerics?
Creating a new generic function for ?sapply? in package ?BiocGenerics?
Creating a new generic function for ?mapply? in package ?BiocGenerics?
Creating a new generic function for ?match? in package ?BiocGenerics?
Creating a new generic function for ?order? in package ?BiocGenerics?
Creating a new generic function for ?paste? in package ?BiocGenerics?
Creating a new generic function for ?rank? in package ?BiocGenerics?
Creating a new generic function for ?rep.int? in package
?BiocGenerics?
Creating a new generic function for ?rownames? in package
?BiocGenerics?
Creating a new generic function for ?colnames? in package
?BiocGenerics?
Creating a new generic function for ?union? in package ?BiocGenerics?
Creating a new generic function for ?intersect? in package
?BiocGenerics?
Creating a new generic function for ?setdiff? in package
?BiocGenerics?
Creating a new generic function for ?sort? in package ?BiocGenerics?
Creating a new generic function for ?table? in package ?BiocGenerics?
Creating a new generic function for ?tapply? in package ?BiocGenerics?
Creating a new generic function for ?unique? in package ?BiocGenerics?
Creating a new generic function for ?unlist? in package ?BiocGenerics?
Creating a new generic function for ?xtabs? in package ?BiocGenerics?
Creating a new generic function for ?clusterCall? in package
?BiocGenerics?
Creating a new generic function for ?clusterApply? in package
?BiocGenerics?
Creating a new generic function for ?clusterApplyLB? in package
?BiocGenerics?
Creating a new generic function for ?clusterEvalQ? in package
?BiocGenerics?
Warning in getPackageName(environment(fdef)) :
Created a package name, ?2014-01-20 01:16:35?, when none found
Creating a new generic function for ?clusterExport? in package
?BiocGenerics?
Creating a new generic function for ?clusterMap? in package
?BiocGenerics?
Creating a new generic function for ?parLapply? in package
?BiocGenerics?
Creating a new generic function for ?parSapply? in package
?BiocGenerics?
Creating a new generic function for ?parApply? in package
?BiocGenerics?
Creating a new generic function for ?parRapply? in package
?BiocGenerics?
Creating a new generic function for ?parCapply? in package
?BiocGenerics?
Creating a new generic function for ?parLapplyLB? in package
?BiocGenerics?
Creating a new generic function for ?parSapplyLB? in package
?BiocGenerics?
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) : undefined exports: .__C__file
Error: loading failed
* DONE (BiocGenerics)
The downloaded source packages are in
?/tmp/Rtmp3P1KdF/downloaded_packages?