Entering edit mode
Guest User
★
13k
@guest-user-4897
Last seen 10.2 years ago
I am a user of XCMS for analysing LC-MS data. I have 500
samples(chromatograms) and I am getting an error message when ever I
start the analysis saying cant make a vector of some MB size.
I got the message after applying this command, it Works for some
samples but at some point it stops:
> xset <- xcmsSet(myDir, ppm = 25, peakwidth = c(20,50), method
="centWave", snthresh = 10, prefilter = c(3,100), mzCenterFun
="wMean", integrate = 1, mzdiff = -0.001, fitgauss = FALSE)
would you please help me and inform me how i woud be possible
increasing the capacity,
-- output of sessionInfo():
(Error: cannot allocate vector of size 225.3 Mb)
--
Sent via the guest posting facility at bioconductor.org.