somewhat Old topic: http://thread.gmane.org/gmane.science.biology.informatics.conductor/50 304 It was never answered. I had this problem to in calling SummarizeOverlaps,GRanges,BamFilesList For me, the problem was resolved by indexing the bam files. Ooops. Francisco, I hope you already got this working.... `Malcolm

Hej Malcom! Sorry, the answer went off-list, it was unrelated to the bai file though. Could you tell me what your error actually was - so that I can reproduce it - and also include your sessionInfo()? Thanks, Nico --------------------------------------------------------------- Nicolas Delhomme Genome Biology Computational Support European Molecular Biology Laboratory Tel: +49 6221 387 8310 Email: nicolas.delhomme at embl.de Meyerhofstrasse 1 - Postfach 10.2209 69102 Heidelberg, Germany --------------------------------------------------------------- On 17 Dec 2013, at 06:00, Malcolm Cook <malcolm.cook at="" gmail.com=""> wrote: > somewhat Old topic: > http://thread.gmane.org/gmane.science.biology.informatics.conductor/ 50304 > > It was never answered. > > I had this problem to in calling SummarizeOverlaps,GRanges,BamFilesList > > For me, the problem was resolved by indexing the bam files. > > Ooops. > > Francisco, I hope you already got this working.... > > `Malcolm > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor --------------------------------------------------------------- Nicolas Delhomme Nathaniel Street Lab Department of Plant Physiology Ume? Plant Science Center Tel: +46 90 786 7989 Email: nicolas.delhomme at plantphys.umu.se SLU - Ume? universitet Ume? S-901 87 Sweden