Hi Sir, I downloaded the R 1.6.1 and i downloaded the annbuilder from your site and i was wondering how can i use the annbuilder and there is directions in the site too.so if u can help me in running the annbuilder that would a great help to me . My operating system is windows 2000. Thanks, ARUN KUMAR VINNAKOTA UNIVERISTY OF NEW MEXICO(CS Dept) 801 locust NE # 1214-x Albuquerque, New Mexico 87102 HOME PH : 505 228 5623 WORK PH : 505 272 0026

>>>>> "arun" == arun kumar vinnakota <arun@unm.edu> writes: arun> I downloaded the R 1.6.1 and i downloaded the annbuilder from your arun> site and i was wondering how can i use the annbuilder and there is arun> directions in the site too.so if u can help me in running the arun> annbuilder that would a great help to me . My operating system is arun> windows 2000. AnnBuilder requires Perl and PostgreSQL, among other things, to run. You probably would have to hack it up quite a bit to get things running on Windows (maybe Cygwin would work, but you have to deal with making sure that R doesn't deal with the Cygwin stuff, since there seem to be slight conflicts, i.e. Cygwin Perl vs. the Perl (ActiveState) that R "likes". I.e. it would be quite an undertaking; note that it works fairly well under Linux, so it might be faster (much longer computation run, but much faster programming/debugging time) to find an old PC for the task. best, -tony -- A.J. Rossini Rsrch. Asst. Prof. of Biostatistics U. of Washington Biostatistics rossini@u.washington.edu FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org -------------- http://software.biostat.washington.edu/ ---------------- FHCRC: M: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX (my tuesday/wednesday/friday locations are completely unpredictable.)

>AnnBuilder requires Perl and PostgreSQL, among other things, to run. >You probably would have to hack it up quite a bit to get things >running on Windows (maybe Cygwin would work, but you have to deal with >making sure that R doesn't deal with the Cygwin stuff, since there >seem to be slight conflicts, i.e. Cygwin Perl vs. the Perl >(ActiveState) that R "likes". The basic functions described in AnnBuilder.Rnw do not require PostGreSQL (unless you want to write the output to a database) and run at a reasonab speed. Functions (described in ABOther.Rnw) that process data from Gene Ontology do require PostgreSQL. > >I.e. it would be quite an undertaking; note that it works fairly well >under Linux, so it might be faster (much longer computation run, but >much faster programming/debugging time) to find an old PC for the >task. > >best, >-tony > >-- >A.J. Rossini Rsrch. Asst. Prof. of Biostatistics >U. of Washington Biostatistics rossini@u.washington.edu >FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org >-------------- http://software.biostat.washington.edu/ ---------------- >FHCRC: M: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email >UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX >(my tuesday/wednesday/friday locations are completely unpredictable.) > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor