Dear Bioconductor community, If you are producing of analyzing ChIP-exo data (Rhee HS, Pugh BF, 2011, Cell 147:1408-19) with replicates, you might want to consider CexoR to uncover high-resolution protein-DNA interactions. It processes data data in BAM aligment format. Devel version is at: http://bioconductor.org/packages/devel/bioc/html/CexoR.html [1] Comments are very wellcome. Best regards, Pedro Madrigal Research Associate Wellcome Trust Sanger Institute Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SA UK Links: ------ [1] http://bioconductor.org/packages/devel/bioc/html/CexoR.html [[alternative HTML version deleted]]