Batch retrieval of transcript and aminoacid lengths for a list of HGNC IDs
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@gabriele-zoppoli-5976
Last seen 10.2 years ago
Dear BioConductor Community I couldn't find an answer to the following simple question anywhere: I have a list of 300some HGNC IDs, and I would like to retrieve their transcript and protein lengths. I cannot find any argument in the biomaRt BioConductor functions to do that or in the Ensembl biomart on the website either Help me please!!! Thanks in advance Gabriele > sessionInfo() R version 3.0.1 (2013-05-16) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=de_BE.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=de_BE.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=de_BE.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] biomaRt_2.16.0 BiocInstaller_1.10.3 loaded via a namespace (and not attached): [1] RCurl_1.95-4.1 tools_3.0.1 XML_3.98-1.1 -- Gabriele Zoppoli, MD Ph.D., Clinical and Experimental Oncology and Hematology Visiting Researcher, BCTRL J.C. Heuson, Institut J. Bordet, Bruxelles BE Internal Medicine Resident, DiMI, IRCCS AOU San Martino IST, Genova, IT Former Guest Researcher, LMP, CCR, NCI, NIH, Bethesda MD Tel: +39 010 353 7968 Mobile 1: +32 478 337 942 Mobile 2: +39 349 617 0129 Email: gabriele.zoppoli@unige.it Alt. Email: zoppoli@gmail.com Alt. Email 2: gzoppoli@libero.it Alt. Email 3: gabriele.zoppoli@bordet.be ---------------------------------------------------------- Ζεῦ πάτερ ἀλλὰ σὺ ῥῦσαι ὑπ' ἠέρος Ï á¼·Î±Ï‚ Ἀχαιῶν, ποίησον δ' αἴθρην, δὸς δ' ὀφθαλμοῖσιν ἰδέσθαι: ἐν δὲ φάει καὶ ὄλεσσον, ἐπεί νύ τοι εὔαδεν οὕτως. *Father Zeus, at least deliver the sons of Acheans from the gloom,* *And make clear the air, and give it to our eyes to see.* *In the light destroy us, since to do thus pleases you. (Il. 17, 645-7) * ---------------------------------------------------------- CONFIDENTIALITY NOTICE\ \ This e-mail message is intende...{{dropped:14}}
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