thank you very much i am working with these coding shan On Tue, Sep 17, 2013 at 3:42 AM, Simona Rossi <simona.rossi@gmail.com>wrote: > Hi Shan, > > try this one: > > library(GEOquery) > getGEOSuppFiles("GSEXXXX") > > > untar("GSEXXXX/GSEXXXX_RAW.tar", exdir="data") > cels <- list.files("data/", pattern = "[gz]") > length(cels) > sapply(paste("data", cels, sep="/"), gunzip) > cels > > Best, Simona > > > On Tue, Sep 17, 2013 at 6:40 AM, Wang Peter <wng.peter@gmail.com> wrote: > >> HELLO all >> gset <- getGEO("GSE15471") >> how to get the cel file?? >> thank you >> >> -- >> shan gao >> Room 231(Dr.Fei lab) >> Boyce Thompson Institute for Plant Research >> Cornell University >> Tower Road, Ithaca, NY 14853-1801 >> Office phone: 1-607-254-1267(day) >> Official email:sg839@cornell.edu >> Facebook:http://www.facebook.com/profile.php?id=100001986532253 >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > > > -- > -- > Dr. Simona Rossi > Bioinformatician > > SIB | Swiss Institute of Bioinformatics > > Quartier Sorge > Bâtiment Génopode > CH-1015 Lausanne > Switzerland > > t +41 21 692 40 83 > f +41 21 692 40 55 > > simona.rossi@isb-sib.ch > www.isb-sib.ch > -- shan gao Room 231(Dr.Fei lab) Boyce Thompson Institute for Plant Research Cornell University Tower Road, Ithaca, NY 14853-1801 Office phone: 1-607-254-1267(day) Official email:sg839@cornell.edu Facebook:http://www.facebook.com/profile.php?id=100001986532253 [[alternative HTML version deleted]]