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fran vino
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40
@fran-vino-6151
Last seen 10.2 years ago
Dear Bioconductor list,
I installed R on UBUNTU, but now how can I install the packages in R.
For
example if I use:
> source("http://bioconductor.org/biocLite.R")
> biocLite("DEseq")
It results:
Warning messages:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package XML had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package annotate had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package genefilter had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package geneplotter had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package DESeq had non-zero exit status
6: installed directory not writable, cannot update packages 'foreign',
'Matrix',
'mgcv', 'rpart', 'spatial'
but if I try to install XML, it results:
> package XML is not available (for R version 3.0.1)
How can I solve it?
Thanks
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