Dear all, I would like to know if there is any Bioconductor/R package that can deal with longitudinal GWAS analysis. Briefly, I have phenotypic data for some individuals (measured at different time points; not necessarily the same number of measures, so one individual can have 2 measures over time, while another might have 5). Then I want to analyze if that phenotype changes differently with time depending on the SNP genotype that I am testing. Thanks in advance. Cheers, Jo?o

Dear Joao would perhaps 'lm' and 'glm' from the 'stats' package be a good place to start? Best wishes Wolfgang On 9 Sep 2013, at 17:26, Joao Fadista <joao.fadista at="" med.lu.se=""> wrote: > Dear all, > > I would like to know if there is any Bioconductor/R package that can deal with longitudinal GWAS analysis. Briefly, I have phenotypic data for some individuals (measured at different time points; not necessarily the same number of measures, so one individual can have 2 measures over time, while another might have 5). Then I want to analyze if that phenotype changes differently with time depending on the SNP genotype that I am testing. Thanks in advance. > > Cheers, > Jo?o > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor