Hello all, Has anyone encountered the same problem as mine? library(preprocessCore) does not work for me. > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.12 (BiocInstaller 1.10.3), ?biocLite for help > biocLite("preprocessCore") BioC_mirror: http://bioconductor.org Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1. Installing package(s) 'preprocessCore' trying URL 'http://bioconductor.org/packages/2.12/bioc/bin/windows/con trib/3.0/preprocessCore_1.22.0.zip' Content type 'application/zip' length 204423 bytes (199 Kb) opened URL downloaded 199 Kb package 'preprocessCore' successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\xrao\AppData\Local\Temp\Rtmp8eMyPl\downloaded_packages Warning message: installed directory not writable, cannot update packages 'class', 'foreign', 'lattice', 'MASS', 'mgcv', 'nlme', 'nnet', 'rpart', 'spatial' > library(preprocessCore) Error in library(preprocessCore) : there is no package called 'preprocessCore' I am using the latest version of R. R version 3.0.1 (2013-05-16) -- "Good Sport" Thanks a lot in advance! Best, Xiayu [[alternative HTML version deleted]]

On Tue, Sep 3, 2013 at 12:52 PM, Rao,Xiayu <xrao at="" mdanderson.org=""> wrote: > Hello all, > > Has anyone encountered the same problem as mine? library(preprocessCore) does not work for me. > >> source("http://bioconductor.org/biocLite.R") > Bioconductor version 2.12 (BiocInstaller 1.10.3), ?biocLite for help > >> biocLite("preprocessCore") > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1. > Installing package(s) 'preprocessCore' > trying URL 'http://bioconductor.org/packages/2.12/bioc/bin/windows/c ontrib/3.0/preprocessCore_1.22.0.zip' > Content type 'application/zip' length 204423 bytes (199 Kb) > opened URL > downloaded 199 Kb > > package 'preprocessCore' successfully unpacked and MD5 sums checked > > The downloaded binary packages are in > C:\Users\xrao\AppData\Local\Temp\Rtmp8eMyPl\downloaded_packages > Warning message: > installed directory not writable, This means the directory you are trying to install in is not writable by the user that R is running as. Since you're on Windows, try running R as an administrator. Right-click on the R icon and choose "Run as administrator". Dan > cannot update packages 'class', 'foreign', 'lattice', 'MASS', 'mgcv', 'nlme', 'nnet', 'rpart', 'spatial' > >> library(preprocessCore) > Error in library(preprocessCore) : > there is no package called 'preprocessCore' > > I am using the latest version of R. R version 3.0.1 (2013-05-16) -- "Good Sport" > > > Thanks a lot in advance! > > Best, > Xiayu > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor