how to do the time series analysis?
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wang peter ★ 2.0k
@wang-peter-4647
Last seen 10.2 years ago
i have 5 time points of expression data, i would like to do some clustering or other time series analysis. thank you -- shan gao Room 231(Dr.Fei lab) Boyce Thompson Institute for Plant Research Cornell University Tower Road, Ithaca, NY 14853-1801 Office phone: 1-607-254-1267(day) Official email:sg839@cornell.edu Facebook:http://www.facebook.com/profile.php?id=100001986532253 [[alternative HTML version deleted]]
Clustering Clustering • 1.1k views
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Wuming Gong ▴ 10
@wuming-gong-6101
Last seen 10.2 years ago
Hi Wang, There are a lot of methods for clustering temporal microarray. You may read this paper for a review: http://biochem218.stanford.edu/Projects%202010/Kuenzel%202010.pdf In Bioconductor, Mfuzz ( http://bioconductor.org/packages/2.12/bioc/html/Mfuzz.html) is a good start. It implements fuzzy c-means and have good visualization tools. Wuming On Tue, Aug 20, 2013 at 2:43 PM, Wang Peter <wng.peter@gmail.com> wrote: > i have 5 time points of expression data, i would like to do > some clustering or other time series analysis. > > thank you > -- > shan gao > Room 231(Dr.Fei lab) > Boyce Thompson Institute for Plant Research > Cornell University > Tower Road, Ithaca, NY 14853-1801 > Office phone: 1-607-254-1267(day) > Official email:sg839@cornell.edu > Facebook:http://www.facebook.com/profile.php?id=100001986532253 > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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thank you very much i will look at it On Tue, Aug 20, 2013 at 4:56 PM, Wuming Gong <gongx030@umn.edu> wrote: > Hi Wang, > > There are a lot of methods for clustering temporal microarray. You may > read this paper for a review: > http://biochem218.stanford.edu/Projects%202010/Kuenzel%202010.pdf > > In Bioconductor, Mfuzz ( > http://bioconductor.org/packages/2.12/bioc/html/Mfuzz.html) is a good > start. It implements fuzzy c-means and have good visualization tools. > > Wuming > > > > On Tue, Aug 20, 2013 at 2:43 PM, Wang Peter <wng.peter@gmail.com> wrote: > >> i have 5 time points of expression data, i would like to do >> some clustering or other time series analysis. >> >> thank you >> -- >> shan gao >> Room 231(Dr.Fei lab) >> Boyce Thompson Institute for Plant Research >> Cornell University >> Tower Road, Ithaca, NY 14853-1801 >> Office phone: 1-607-254-1267(day) >> Official email:sg839@cornell.edu >> Facebook:http://www.facebook.com/profile.php?id=100001986532253 >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- shan gao Room 231(Dr.Fei lab) Boyce Thompson Institute for Plant Research Cornell University Tower Road, Ithaca, NY 14853-1801 Office phone: 1-607-254-1267(day) Official email:sg839@cornell.edu Facebook:http://www.facebook.com/profile.php?id=100001986532253 [[alternative HTML version deleted]]
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