Hi everyone
Is anybody out there using limmaGUI for microarray analysis?
I have Agilent output .txt files and I wonder if they can be imported
in
limmaGUI.
I have tried but it doesn't work! Can anyone give a hint on how to
start...?
This program is totally new for me and using the "Help" I could not
figure out!
Thank,
Adrian
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Hi Adrian,
> I have tried but it doesn't work!
You need to describe the error in more detail than that
for us to be able to help you.
limmaGUI does support Agilent files. (Just follow the
instructions in the Swirl example, and replace .spot files
with your Agilent files. If you get any errors when you try to
read the Agilent files into limmaGUI, please report them as
accurately as possible on this mailing list (including errors
in message boxes and in the main R console). Then if you have
any trouble, we can work out whether the problem is in limma
(the underlying microarray data analyser) or the GUI (Graphical
User Interface). You should also tell us the version number of
limma and limmaGUI you are using and if possible, send the
header of one of your Agilent files (i.e. the first few lines,
before the main table of raw data) and perhaps a few rows of
the actual raw data.
Regards,
James
